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Bio::MapIO::mapmaker.3pm
Langue: en
Version: 2010-05-19 (ubuntu - 24/10/10)
Section: 3 (Bibliothèques de fonctions)
Sommaire
NAME
Bio::MapIO::mapmaker - A Mapmaker Map readerSYNOPSIS
# do not use this object directly it is accessed through the Bio::MapIO systemuse Bio::MapIO; my $mapio = Bio::MapIO->new(-format => "mapmaker", -file => "mapfile.map"); while ( my $map = $mapio->next_map ) { # get each map foreach my $marker ( $map->each_element ) { # loop through the markers associated with the map } }
DESCRIPTION
This object contains code for parsing and processing Mapmaker output and creating Bio::Map::MapI objects from it.FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:http://bugzilla.open-bio.org/
AUTHOR - Jason Stajich
Email jason@bioperl.orgAPPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _next_map
Title : next_map Usage : my $map = $factory->next_map; Function: Get one or more map objects from the Mapmaker input Returns : Bio::Map::MapI Args : none
See Bio::Map::MapI
write_map
Title : write_map Usage : $factory->write_map($map); Function: Write a map out through the factory Returns : none Args : Bio::Map::MapI
Contenus ©2006-2024 Benjamin Poulain
Design ©2006-2024 Maxime Vantorre